- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.48 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 2 x ACT: ACETATE ION(Non-functional Binders)
ACT.3: 3 residues within 4Å:- Chain A: R.239, E.333, L.337
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:E.333
- Salt bridges: A:R.239
ACT.12: 3 residues within 4Å:- Chain B: R.239, E.333, L.337
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:E.333
- Salt bridges: B:R.239
- 4 x ZN: ZINC ION(Non-covalent)
ZN.4: 2 residues within 4Å:- Chain A: D.100, D.104
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.100, A:D.100, A:D.104, H2O.2, H2O.6
ZN.5: 3 residues within 4Å:- Chain A: D.252, D.256, D.270
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:D.252, H2O.1, H2O.1, H2O.6, H2O.7
ZN.13: 2 residues within 4Å:- Chain B: D.100, D.104
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.100, B:D.100, B:D.104, H2O.14, H2O.18
ZN.14: 3 residues within 4Å:- Chain B: D.252, D.256, D.270
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:D.252, H2O.13, H2O.14, H2O.18, H2O.19
- 8 x LV4: 1-[2-(trifluoromethyloxy)phenyl]thiourea(Non-covalent)
LV4.6: 8 residues within 4Å:- Chain A: K.50, F.52, Y.215, F.248, K.358, T.359, R.362
- Ligands: SO4.1
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:F.248, A:F.248, A:R.362
- pi-Stacking: A:F.52
- pi-Cation interactions: A:R.362
LV4.7: 8 residues within 4Å:- Chain A: L.157, K.160, F.212, L.216, E.238
- Chain B: K.27, Y.28
- Ligands: LV4.8
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:F.212, B:Y.28
- Hydrogen bonds: A:E.238, A:E.238
- Water bridges: A:E.238
LV4.8: 8 residues within 4Å:- Chain A: D.153, L.157, K.160, V.220, L.224, M.234, E.238
- Ligands: LV4.7
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:V.220
LV4.9: 7 residues within 4Å:- Chain A: V.254, F.258, Y.314, S.315, L.319, Q.320, F.323
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:V.254, A:V.254, A:F.258, A:Q.320, A:F.323
- Hydrogen bonds: A:S.315
LV4.15: 8 residues within 4Å:- Chain B: K.50, F.52, Y.215, F.248, K.358, T.359, R.362
- Ligands: SO4.10
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:F.248, B:F.248, B:R.362
- pi-Stacking: B:F.52
- pi-Cation interactions: B:R.362
LV4.16: 8 residues within 4Å:- Chain A: K.27, Y.28
- Chain B: L.157, K.160, F.212, L.216, E.238
- Ligands: LV4.17
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:F.212, A:Y.28
- Hydrogen bonds: B:E.238, B:E.238
- Water bridges: B:E.238
LV4.17: 8 residues within 4Å:- Chain B: D.153, L.157, K.160, V.220, L.224, M.234, E.238
- Ligands: LV4.16
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:V.220
LV4.18: 7 residues within 4Å:- Chain B: V.254, F.258, Y.314, S.315, L.319, Q.320, F.323
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:V.254, B:V.254, B:F.258, B:Q.320, B:F.323
- Hydrogen bonds: B:S.315
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Petrick, J.K. et al., PanDDA analysis group deposition - FPPS screened against the DSI Fragment Library. To Be Published
- Release Date
- 2020-04-29
- Peptides
- Farnesyl diphosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.48 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 2 x ACT: ACETATE ION(Non-functional Binders)
- 4 x ZN: ZINC ION(Non-covalent)
- 8 x LV4: 1-[2-(trifluoromethyloxy)phenyl]thiourea(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Petrick, J.K. et al., PanDDA analysis group deposition - FPPS screened against the DSI Fragment Library. To Be Published
- Release Date
- 2020-04-29
- Peptides
- Farnesyl diphosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A