SMTL ID : 5tw3.1

Crystal Structure of HIV-1 Reverse Transcriptase in Complex with 5-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)-4-fluorophenoxy)-7-fluoro-2-naphthonitrile (JLJ636), a Non-nucleoside Inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 7N1: 5-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]-4-fluorophenoxy}-7-fluoronaphthalene-2-carbonitrile(Non-covalent)

7N1.1: 16 residues within 4Å: Chain A: P.97, L.102, K.103, K.104, K.105, V.108, V.110, V.181, Y.183, Y.190, G.192, F.229, W.231, L.236, P.238, Y.320 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.102, A:K.105, A:V.108, A:V.110, A:Y.183, A:Y.190, A:Y.190, A:F.229, A:L.236 Hydrogen bonds: A:K.105, A:P.238 pi-Stacking: A:Y.190, A:W.231, A:W.231

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: D.445, D.500, H.541, D.551 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.445, A:D.500

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kudalkar, S.N. et al., Structural and Preclinical Studies of Computationally Designed Non-Nucleoside Reverse Transcriptase Inhibitors for Treating HIV infection. Mol. Pharmacol. (2017)

Release Date

2017-03-15

Peptides

HIV-1 REVERSE TRANSCRIPTASE, P66 SUBUNIT: A
HIV-1 REVERSE TRANSCRIPTASE, P51 SUBUNIT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HIV-1 REVERSE TRANSCRIPTASE, P66 SUBUNIT

HIV-1 REVERSE TRANSCRIPTASE, P51 SUBUNIT

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