SMTL ID : 6jx8.1 (1 other biounit)

Crystal Structure of the complex of peptidoglycan recognition protein, PGRP-S from Camelus dromedarius at 2.67 A resolution.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.67 Å

Oligo State

homo-dimer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: H.37, A.39, H.146, T.152 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.37 Water bridges: A:S.154 EDO.3: 5 residues within 4Å: Chain B: S.36, H.37, Y.71, H.146, S.154 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.36, B:S.36, B:Y.71, B:S.154 EDO.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.2: 4 residues within 4Å: Chain A: W.66, C.67, R.85, A.92 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:C.67 Water bridges: A:G.65, A:R.85 Salt bridges: A:R.85

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 3 residues within 4Å: Chain B: W.66, C.67, R.85 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Viswanathan, V. et al., Crystal Structure of the complex of peptidoglycan recognition protein, PGRP-S from Camelus dromedarius at 2.67 A resolution. To Be Published

Release Date

2019-05-15

Peptides

Peptidoglycan recognition protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peptidoglycan recognition protein 1

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