SMTL ID : 6t2m.1

VDR-ZK168281 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-2-2-mer

Ligands

2 x M9Q: ethyl (~{Z})-3-[1-[(~{E},1~{R},4~{R})-4-[(1~{R},3~{a}~{S},4~{E},7~{a}~{R})-7~{a}-methyl-4-[(2~{Z})-2-[(3~{S},5~{R})-2-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-1-yl]-1-oxidanyl-pent-2-enyl]cyclopropyl]prop-2-enoate(Non-covalent)

M9Q.1: 21 residues within 4Å: Chain A: Y.24, Y.28, L.107, A.108, V.111, S.114, I.148, R.151, S.152, S.155, W.163, C.165, V.177, A.180, G.181, H.182, H.272, Q.275, Y.276, L.279, V.293 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.111, A:V.111, A:W.163, A:V.177, A:V.177, A:L.279, A:V.293 Hydrogen bonds: A:Y.24, A:Y.24, A:R.151 Salt bridges: A:H.182 M9Q.2: 21 residues within 4Å: Chain C: Y.24, Y.28, L.107, A.108, V.111, S.114, I.148, R.151, S.152, S.155, W.163, C.165, V.177, A.180, G.181, H.182, H.272, Q.275, Y.276, L.279, V.293 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:V.111, C:V.111, C:W.163, C:V.177, C:V.177, C:L.279, C:V.293 Hydrogen bonds: C:Y.24, C:R.151 Salt bridges: C:H.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Belorusova, A.Y. et al., Structural Analysis of VDR Complex with ZK168281 Antagonist. J.Med.Chem. (2020)

Release Date

2020-08-26

Peptides

Vitamin D3 receptor A: AC
Nuclear receptor coactivator 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Vitamin D3 receptor A

Nuclear receptor coactivator 1

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