SMTL ID : 7bo6.1

VDR complex with LCA derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.86 Å

Oligo State

hetero-2-2-mer

Ligands

2 x FKC: (4R)-4-[(3R,5R,8R,9S,10S,13R,14S,17R)-10,13-dimethyl-3-(2-methyl-2-oxidanyl-propyl)-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl]pentanoic acid(Non-covalent)

FKC.1: 19 residues within 4Å: Chain A: Y.24, Y.28, L.104, L.107, L.110, V.111, I.145, I.148, M.149, S.152, S.155, W.163, Y.172, V.177, H.182, L.187, H.272, Y.276, V.293 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.104, A:L.107, A:L.110, A:V.111, A:I.145, A:I.148, A:W.163, A:Y.172, A:L.187, A:V.293 Hydrogen bonds: A:Y.24, A:S.155, A:H.182 FKC.2: 19 residues within 4Å: Chain C: Y.24, Y.28, L.104, L.107, L.110, V.111, I.145, I.148, M.149, S.152, S.155, W.163, Y.172, V.177, H.182, L.187, H.272, Y.276, V.293 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:L.104, C:L.107, C:L.110, C:V.111, C:I.145, C:I.148, C:W.163, C:Y.172, C:L.187, C:V.293 Hydrogen bonds: C:S.155, C:H.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gaikwad, S. et al., Lithocholic acid-based design of noncalcemic vitamin D receptor agonists. Bioorg.Chem. (2021)

Release Date

2021-08-11

Peptides

Vitamin D3 receptor A: AC
Nuclear receptor coactivator 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Vitamin D3 receptor A

Nuclear receptor coactivator 1

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