SMTL ID : 7kre.1

Crystal Structure of HIV-1 Reverse Transcriptase in Complex with 4-((6-cyanonaphthalen-1-yl)oxy)-3-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenyl sulfurofluoridate (JLJ704)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.73 Å

Oligo State

hetero-1-1-mer

Ligands

1 x X2V: 4-[(6-cyanonaphthalen-1-yl)oxy]-3-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenyl sulfurofluoridate(Non-covalent)

X2V.1: 15 residues within 4Å: Chain A: L.102, K.103, K.104, K.105, V.108, V.110, V.181, Y.183, Y.190, P.227, F.229, W.231, P.238, Y.320 Chain B: E.138 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.102, A:V.108, A:V.110, A:Y.183, A:Y.190, A:Y.190 Hydrogen bonds: A:K.105, A:P.238 Salt bridges: A:K.103 pi-Stacking: A:Y.190, A:W.231, A:W.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ippolito, J.A. et al., Covalent Inhibition of Wild-Type HIV-1 Reverse Transcriptase Using a Fluorosulfate Warhead. Acs Med.Chem.Lett. (2021)

Release Date

2021-01-13

Peptides

HIV-1 REVERSE TRANSCRIPTASE, P66 SUBUNIT: A
HIV-1 REVERSE TRANSCRIPTASE, P51 SUBUNIT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HIV-1 REVERSE TRANSCRIPTASE, P66 SUBUNIT

HIV-1 REVERSE TRANSCRIPTASE, P51 SUBUNIT

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