SMTL ID : 7qph.1

Crystal structure of mouse CARM1 in complex with histone H3_22-31 K27 acetylated

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-4-4-mer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain D: I.164, A.269, I.271, T.276, W.278 2 PLIP interactions: 2 interactions with chain D Water bridges: D:T.276, D:W.278

4 x QVR: (2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[(~{E})-prop-1-enyl]oxolane-3,4-diol(Non-covalent)

QVR.2: 22 residues within 4Å: Chain A: F.12, Y.24, F.25, Y.28, Q.34, M.37, G.67, G.69, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, E.141, M.143, S.146 Chain E: R.5 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.69, A:E.89, A:A.90, A:S.91, A:V.117, A:E.118 Water bridges: A:R.15, A:Q.34, A:Q.34 pi-Stacking: A:F.25 QVR.3: 24 residues within 4Å: Chain D: F.12, R.15, Y.24, F.25, Y.28, Q.34, M.37, G.67, G.69, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.134, E.141, M.143, S.146 Chain F: R.5 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:G.67, D:G.69, D:E.89, D:A.90, D:V.117, D:E.118 Water bridges: D:R.15, D:Q.34, D:S.131 pi-Stacking: D:F.25 QVR.4: 24 residues within 4Å: Chain C: F.12, R.15, Y.24, F.25, Y.28, Q.34, M.37, G.67, G.69, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.134, E.141, M.143, S.146 Chain G: R.5 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:Y.28 Hydrogen bonds: C:G.69, C:E.89, C:A.90, C:V.117, C:E.118 Water bridges: C:R.15, C:Q.34, C:Q.34 pi-Stacking: C:F.25 QVR.5: 23 residues within 4Å: Chain B: F.12, R.15, Y.24, F.25, Y.28, M.37, G.67, G.69, V.88, E.89, A.90, S.91, G.115, K.116, V.117, E.118, E.132, P.133, M.134, E.141, M.143, S.146 Chain H: R.5 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:G.67, B:G.69, B:E.89, B:A.90, B:V.117, B:E.118 Water bridges: B:R.15, B:Q.34, B:S.131 pi-Stacking: B:F.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marechal, N. et al., CARM1 Transition State Mimics. To Be Published

Release Date

2023-01-18

Peptides

Histone-arginine methyltransferase CARM1: ABCD
Histone H3 22-31 K27 acetylated: EFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
H

G
G

H
F

Histone-arginine methyltransferase CARM1

Histone H3 22-31 K27 acetylated

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