SMTL ID : 8p9w.1

vitamin D receptor complex with Xe4MeCF3 analog

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-2-2-mer

Ligands

2 x XDO: (1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{S},3~{a}~{S},7~{a}~{S})-1,7~{a}-dimethyl-1-[6,6,6-tris(fluoranyl)-5-oxidanyl-5-(trifluoromethyl)hexa-1,3-diynyl]-2,3,3~{a},5,6,7-hexahydroinden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol(Non-covalent)

XDO.1: 22 residues within 4Å: Chain A: Y.24, Y.28, L.104, L.107, A.108, V.111, S.114, I.148, R.151, S.152, S.155, W.163, C.165, V.177, A.180, H.182, L.190, H.272, Y.276, L.289, V.293, F.297 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.24, A:L.107, A:V.111, A:I.148, A:W.163, A:V.177, A:L.190 Hydrogen bonds: A:Y.24, A:R.151, A:S.155 Halogen bonds: A:A.180 XDO.2: 22 residues within 4Å: Chain C: Y.24, Y.28, L.104, L.107, A.108, V.111, S.114, I.148, R.151, S.152, S.155, W.163, C.165, V.177, A.180, H.182, L.190, H.272, Y.276, L.289, V.293, F.297 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:Y.24, C:L.107, C:V.111, C:I.148, C:W.163, C:V.177, C:L.190 Hydrogen bonds: C:Y.24, C:Y.24, C:R.151, C:S.155 Halogen bonds: C:A.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Len-Tayon, K. et al., A vitamin D-based strategy overcomes chemoresistance in prostate cancer. Br.J.Pharmacol. (2024)

Release Date

2024-06-26

Peptides

Vitamin D3 receptor A: AC
Nuclear receptor coactivator 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Vitamin D3 receptor A

Nuclear receptor coactivator 1

Related Entries With Identical Sequence