SMTL ID : 8x6a.1

Complex structure of AtHPPD with Y18992

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: H.198, H.280, E.366 Ligands: YFC.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.198, A:H.280, A:E.366, H2O.3 CO.3: 4 residues within 4Å: Chain B: H.198, H.280, E.366 Ligands: YFC.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.198, B:H.280, B:E.366, H2O.14

2 x YFC: 2-[[4-[2-(4-methylphenyl)-2-oxidanylidene-ethyl]-3-oxidanylidene-1,4-benzothiazin-6-yl]-oxidanyl-methylidene]cyclohexane-1,3-dione(Non-covalent)

YFC.2: 19 residues within 4Å: Chain A: H.198, V.200, S.239, P.252, N.254, Q.265, H.280, M.307, F.353, T.354, P.356, F.364, E.366, F.391, G.392, N.395, F.396, L.399 Ligands: CO.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:P.252, A:F.353, A:F.353, A:P.356, A:F.364, A:F.391, A:F.396 Hydrogen bonds: A:Q.265 Water bridges: A:Q.351 pi-Stacking: A:F.364 YFC.4: 19 residues within 4Å: Chain B: H.198, V.200, S.239, P.252, N.254, Q.265, H.280, M.307, F.353, T.354, P.356, F.364, E.366, F.391, G.392, N.395, F.396, L.399 Ligands: CO.3 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:P.252, B:F.353, B:F.353, B:P.356, B:F.364, B:F.391, B:F.396 Hydrogen bonds: B:Q.265 Water bridges: B:Q.351 pi-Stacking: B:F.364

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, G.-F. et al., Complex structure of AtHPPD with Y18992. To Be Published

Release Date

2024-11-20

Peptides

4-hydroxyphenylpyruvate dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

4-hydroxyphenylpyruvate dioxygenase

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