SMTL ID : 8xu9.1

Crystal structure of AtHPPD-YH20531 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: H.198, H.280, E.366 Ligands: 01.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.198, A:H.280, A:E.366, H2O.2 CO.3: 4 residues within 4Å: Chain B: H.198, H.280, E.366 Ligands: 01.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.198, B:H.280, B:E.366, H2O.9

2 x 01: 2-fluoranyl-~{N}-(5-methyl-1,3,4-oxadiazol-2-yl)-3-propylsulfinyl-4-(trifluoromethyl)benzamide

01.2: 15 residues within 4Å: Chain A: H.198, V.200, V.241, P.252, Q.265, H.280, Q.351, F.353, E.366, F.391, G.392, N.395, F.396, L.399 Ligands: CO.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.241, A:P.252, A:F.353, A:F.353, A:F.391 Hydrogen bonds: A:Q.265 Water bridges: A:S.239, A:N.254, A:Q.351, A:Q.351 pi-Stacking: A:F.396 pi-Cation interactions: A:F.353 01.4: 15 residues within 4Å: Chain B: H.198, V.200, V.241, P.252, Q.265, H.280, Q.351, F.353, E.366, F.391, G.392, N.395, F.396, L.399 Ligands: CO.3 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:V.241, B:P.252, B:F.353, B:F.353, B:F.391 Hydrogen bonds: B:Q.265 Water bridges: B:S.239, B:N.254, B:Q.351, B:Q.351 pi-Stacking: B:F.396 pi-Cation interactions: B:F.353

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, J. et al., Crystal structure of AtHPPD-YH20531 complex. To Be Published

Release Date

2025-01-15

Peptides

4-hydroxyphenylpyruvate dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

4-hydroxyphenylpyruvate dioxygenase

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