SMTL ID : 9rp9.1

Crystal structure of mouse pVHL-ElonginB-ElonginC complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 3 residues within 4Å: Chain A: R.131, S.132, E.135 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.131, A:S.132

3 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 3 residues within 4Å: Chain A: R.62, S.88, L.89 Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain B: T.23, F.25 Ligand excluded by PLIP IOD.6: 3 residues within 4Å: Chain C: M.90, N.93, F.94 Ligand excluded by PLIP

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: R.31, T.73, D.75, R.110, Q.113 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.31, A:R.31, A:T.73, A:R.110 EDO.5: 4 residues within 4Å: Chain B: K.28, L.50, D.52, D.53 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.28, B:K.28, B:D.52, B:D.53 EDO.8: 5 residues within 4Å: Chain C: F.47, R.48, E.49, I.50, F.94 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.49 EDO.9: 5 residues within 4Å: Chain C: H.53, S.56, K.57, M.60 Ligands: PEG.7 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.56

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 7 residues within 4Å: Chain B: P.96 Chain C: K.57, I.80, A.81, E.83, I.84 Ligands: EDO.9 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:K.57, C:P.79, C:A.81, C:E.83, C:E.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blat, A. et al., Crystal structure of mouse pVHL-ElonginB-ElonginC complex. To Be Published

Release Date

2025-07-09

Peptides

von Hippel-Lindau disease tumor suppressor: A
Elongin-B: B
Elongin-C: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

von Hippel-Lindau disease tumor suppressor

Elongin-B

Elongin-C

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