SMTL ID : 5lli.1 (3 other biounits)

pVHL:EloB:EloC in complex with VH298

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 6Z3: (2~{S},4~{R})-1-[(2~{S})-2-[(1-cyanocyclopropyl)carbonylamino]-3,3-dimethyl-butanoyl]-~{N}-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl]-4-oxidanyl-pyrrolidine-2-carboxamide(Non-covalent)

6Z3.1: 12 residues within 4Å: Chain C: N.16, R.18, W.37, F.40, Y.47, P.48, I.58, H.59, S.60, Y.61, H.64, W.66 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:R.18, C:W.37, C:I.58, C:I.58, C:Y.61, C:Y.61, C:W.66 Hydrogen bonds: C:Y.47, C:H.59, C:Y.61, C:H.64 pi-Stacking: C:Y.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frost, J. et al., Potent and selective chemical probe of hypoxic signalling downstream of HIF-alpha hydroxylation via VHL inhibition. Nat Commun (2016)

Release Date

2016-11-09

Peptides

Transcription elongation factor B polypeptide 2: A
Transcription elongation factor B polypeptide 1: B
Von Hippel-Lindau disease tumor suppressor: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Transcription elongation factor B polypeptide 2

Transcription elongation factor B polypeptide 1

Von Hippel-Lindau disease tumor suppressor

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