SMTL ID : 4b9k.3 (3 other biounits)

pVHL-ELOB-ELOC complex_(2S,4R)-1-(3-amino-2-methylbenzoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide bound

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-oligomer

Ligands

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 3 residues within 4Å: Chain B: F.47, R.48, E.49 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.47 Hydrogen bonds: B:E.49 ACT.2: 6 residues within 4Å: Chain B: S.24, G.25, T.26, L.95, D.96, C.97 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.26, B:T.26, B:D.96 ACT.3: 2 residues within 4Å: Chain C: R.40, R.119 5 PLIP interactions: 5 interactions with chain C Water bridges: C:R.40, C:S.126, C:S.126 Salt bridges: C:R.40, C:R.119

1 x TG0: (2S,4R)-1-(3-AMINO-2-METHYLBENZOYL)-4-HYDROXY-N-(4-(4-METHYLTHIAZOL-5-YL)BENZYL)PYRROLIDINE-2-CARBOXAMIDE(Non-covalent)

TG0.4: 14 residues within 4Å: Chain C: F.34, P.44, W.46, F.49, Y.56, P.57, L.59, R.65, I.67, H.68, S.69, Y.70, H.73, W.75 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:W.46, C:F.49, C:I.67, C:I.67, C:W.75 Hydrogen bonds: C:R.65, C:H.68, C:S.69, C:Y.70, C:H.73 pi-Stacking: C:Y.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buckley, D.L. et al., Small-Molecule Inhibitors of the Interaction between the E3 Ligase Vhl and Hif1 Alpha. Angew.Chem.Int.Ed.Engl. (2012)

Release Date

2012-10-24

Peptides

TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2: A
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1: B
VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

C
I

TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2

TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1

VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR

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