SMTL ID : 8pc2.2 (1 other biounit)

SelDeg51 in complex with FKBP51FK1 domain and pVHL:EloB:EloC

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x XZW: [(1~{R})-3-(3,4-dimethoxyphenyl)-1-[4-[[1-[3-[2-[[[(2~{S},4~{R})-1-[(2~{S})-2-[(1-fluoranylcyclopropyl)carbonylamino]-3,3-dimethyl-butanoyl]-4-oxidanyl-pyrrolidin-2-yl]carbonylamino]methyl]-5-(4-methyl-1,3-thiazol-5-yl)phenoxy]propyl]-1,2,3-triazol-4-yl]methoxy]phenyl]propyl] (2~{S})-1-[(2~{S})-2-cyclohexyl-2-(3,4,5-trimethoxyphenyl)ethanoyl]piperidine-2-carboxylate(Non-covalent)

XZW.1: 39 residues within 4Å: Chain A: N.16, R.18, E.19, P.20, Q.22, F.25, P.35, W.37, F.40, Y.47, P.48, T.49, L.50, R.56, I.58, H.59, S.60, Y.61, H.64, W.66 Chain D: Y.45, G.47, K.48, L.49, D.56, F.65, V.66, G.72, Q.73, V.74, I.75, W.78, A.100, Y.101, S.106, K.109, I.110, L.116, F.118 26 PLIP interactions: 15 interactions with chain A, 11 interactions with chain D Hydrophobic interactions: A:P.20, A:W.37, A:Y.47, A:Y.47, A:I.58, A:Y.61, A:W.66, D:Y.45, D:D.56, D:F.65, D:F.65, D:I.75, D:W.78, D:I.110 Hydrogen bonds: A:R.56, A:H.59, A:S.60, A:S.60, A:Y.61, A:Y.61, A:H.64, D:I.75, D:Y.101 pi-Stacking: A:H.59, D:F.65 Halogen bonds: D:Q.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Geiger, T.M. et al., Discovery of a Potent Proteolysis Targeting Chimera Enables Targeting the Scaffolding Functions of FK506-Binding Protein 51 (FKBP51). Angew.Chem.Int.Ed.Engl. (2024)

Release Date

2023-11-15

Peptides

von Hippel-Lindau disease tumor suppressor: A
Elongin-C: B
Elongin-B: C
Peptidyl-prolyl cis-trans isomerase FKBP5: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

C
F

D
H

von Hippel-Lindau disease tumor suppressor

Elongin-C

Elongin-B

Peptidyl-prolyl cis-trans isomerase FKBP5

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