SMTL ID : 6gmq.4 (3 other biounits)

pVHL:EloB:EloC in complex with (4-(1H-pyrrol-1-yl)phenyl)methanol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.76 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x F4K: (4-pyrrol-1-ylphenyl)methanol(Non-covalent)

F4K.1: 9 residues within 4Å: Chain C: L.67, R.69, G.76, L.77, E.83, Y.105, D.146, R.149, L.150 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:L.67, C:E.83, C:L.150 pi-Cation interactions: C:R.69

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 2 residues within 4Å: Chain C: R.110, S.117 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain C Water bridges: B:E.77, C:R.31 Salt bridges: C:R.31, C:R.110

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.3: 6 residues within 4Å: Chain C: W.37, Y.47, H.59, S.60, H.64, W.66 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:W.66 Hydrogen bonds: C:W.37, C:H.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lucas, X. et al., Surface Probing by Fragment-Based Screening and Computational Methods Identifies Ligandable Pockets on the von Hippel-Lindau (VHL) E3 Ubiquitin Ligase. J. Med. Chem. (2018)

Release Date

2018-08-22

Peptides

Elongin-B: A
Elongin-C: B
von Hippel-Lindau disease tumor suppressor: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
J

B
K

C
L

Elongin-B

Elongin-C

von Hippel-Lindau disease tumor suppressor

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