SMTL ID : 6gmx.1 (3 other biounits)

pVHL:EloB:EloC in complex with 6-chlorothiochroman-4-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.53 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x F7B: 6-chloranyl-2,3-dihydrothiochromen-4-one(Non-covalent)

F7B.1: 8 residues within 4Å: Chain B: E.49, I.50, P.51, V.54, E.87, M.90, A.91, F.94 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:E.49, B:I.50, B:E.87

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.2: 6 residues within 4Å: Chain C: W.37, Y.47, H.59, S.60, H.64, W.66 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:W.37 Hydrogen bonds: C:S.60, C:H.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lucas, X. et al., Surface Probing by Fragment-Based Screening and Computational Methods Identifies Ligandable Pockets on the von Hippel-Lindau (VHL) E3 Ubiquitin Ligase. J. Med. Chem. (2018)

Release Date

2018-08-08

Peptides

Elongin-B: A
Elongin-C: B
von Hippel-Lindau disease tumor suppressor: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Elongin-B

Elongin-C

von Hippel-Lindau disease tumor suppressor

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