SMTL ID : 9eqj.1 (1 other biounit)

Crystal structure of pVHL:EloB:EloC in complex with MP-1-39

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 01: (2S,4R)-1-[(2R)-2-[(1-fluoranylcyclopropyl)carbonylamino]-3-methyl-3-[[cis-4-(morpholin-4-ylmethyl)cyclohexyl]methylsulfanyl]butanoyl]-N-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl]-4-oxidanyl-pyrrolidine-2-carboxamide

01.1: 17 residues within 4Å: Chain C: N.16, R.18, F.25, P.35, W.37, F.40, P.46, Y.47, P.48, L.50, R.56, I.58, H.59, S.60, Y.61, H.64, W.66 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:R.18, C:W.37, C:W.37, C:I.58, C:Y.61, C:W.66 Hydrogen bonds: C:Y.47, C:R.56, C:H.59, C:S.60, C:Y.61 Water bridges: C:H.64 pi-Stacking: C:Y.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pierri, M. et al., Stereochemical inversion at a 1,4-cyclohexyl PROTAC linker fine-tunes conformation and binding affinity. Bioorg.Med.Chem.Lett. (2024)

Release Date

2024-08-28

Peptides

Elongin-B: A
Elongin-C: B
von Hippel-Lindau disease tumor suppressor: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Elongin-B

Elongin-C

von Hippel-Lindau disease tumor suppressor

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