SMTL ID : 4w9l.2 (3 other biounits)

pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-((S)-2-acetamido-3,3-dimethylbutanamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 15)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 3JJ: N-acetyl-3-methyl-L-valyl-3-methyl-L-valyl-(4R)-4-hydroxy-N-[4-(4-methyl-1,3-thiazol-5-yl)benzyl]-L-prolinamide(Non-covalent)

3JJ.1: 13 residues within 4Å: Chain C: N.16, F.25, P.35, W.37, F.40, Y.47, P.48, I.58, H.59, S.60, Y.61, H.64, W.66 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:W.37, C:F.40, C:I.58, C:I.58, C:Y.61, C:Y.61, C:W.66 Hydrogen bonds: C:N.16, C:N.16, C:Y.47, C:H.59, C:Y.61, C:H.64 Water bridges: C:Y.61 pi-Stacking: C:Y.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Galdeano, C. et al., Structure-Guided Design and Optimization of Small Molecules Targeting the Protein-Protein Interaction between the von Hippel-Lindau (VHL) E3 Ubiquitin Ligase and the Hypoxia Inducible Factor (HIF) Alpha Subunit with in Vitro Nanomolar Affinities. J.Med.Chem. (2014)

Release Date

2014-09-10

Peptides

Transcription elongation factor B polypeptide 2: A
Transcription elongation factor B polypeptide 1: B
Von Hippel-Lindau disease tumor suppressor: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

Transcription elongation factor B polypeptide 2

Transcription elongation factor B polypeptide 1

Von Hippel-Lindau disease tumor suppressor

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