SMTL ID : 8bdm.2 (3 other biounits)

VCB in complex with compound 26

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x QE9: (2~{S},4~{R})-~{N}-[[2-(2-methoxyethoxy)-4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl]-1-[(2~{R})-3-methyl-2-(3-methyl-1,2-oxazol-5-yl)butanoyl]-4-oxidanyl-pyrrolidine-2-carboxamide(Non-covalent)

QE9.1: 12 residues within 4Å: Chain C: R.18, F.25, W.37, F.40, Y.47, P.48, I.58, H.59, S.60, Y.61, H.64, W.66 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:R.18, C:I.58, C:I.58, C:Y.61, C:W.66 Hydrogen bonds: C:W.37, C:H.59, C:Y.61, C:H.64 pi-Stacking: C:Y.47, C:Y.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krieger, J. et al., Systematic Potency and Property Assessment of VHL Ligands and Implications on PROTAC Design. Chemmedchem (2023)

Release Date

2023-02-15

Peptides

Elongin-B: A
Elongin-C: B
von Hippel-Lindau disease tumor suppressor: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

Elongin-B

Elongin-C

von Hippel-Lindau disease tumor suppressor

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