SMTL ID : 1h8d.1

X-ray structure of the human alpha-thrombin complex with a tripeptide phosphonate inhibitor.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x PHW: N-[(benzyloxy)carbonyl]-beta-phenyl-D-phenylalanyl-N-{(1S,3E)-1-[dihydroxy(diphenoxy)-lambda~5~-phosphanyl]-4-methoxybut-3-en-1-yl}-L-prolinamide(Non-covalent)

PHW.1: 18 residues within 4Å: Chain A: H.43, Y.47, W.50, E.94, N.95, L.96, E.146, I.172, A.193, C.194, E.195, G.196, S.198, W.220, G.221, E.222, G.223, C.224 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:Y.47, A:W.50, A:L.96, A:E.146, A:I.172, A:A.193, A:E.195, A:W.220, A:W.220, A:E.222, A:E.222 Hydrogen bonds: A:G.196, A:S.198, A:G.221, A:G.221 Water bridges: A:H.43, A:K.52, A:E.195, A:S.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Skordalakes, E. et al., Inhibition of Human Alpha-Thrombin by a Phosphonate Tripeptide Proceeds Via a Metastable Pentacoordinated Phosphorus Intermediate. J.Mol.Biol. (2001)

Release Date

2001-02-26

Peptides

THROMBIN: A
HIRUDIN I: B
THROMBIN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
I

C
L

THROMBIN

HIRUDIN I

THROMBIN

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