SMTL ID : 1hrv.2 (3 other biounits)

HRV14/SDZ 35-682 COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-5-5-5-5-mer

Ligands

5 x SDZ: 1-[2-HYDROXY-3-(4-CYCLOHEXYL-PHENOXY)-PROPYL]-4-(2-PYRIDYL)-PIPERAZINE(Non-covalent)

SDZ.1: 16 residues within 4Å: Chain A: I.104, L.106, F.124, S.126, Y.128, Y.152, P.174, V.176, F.186, V.188, V.191, Y.197, I.215, M.224, H.245 Chain C: A.24 14 PLIP interactions: 13 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:I.104, A:Y.152, A:Y.152, A:P.174, A:V.176, A:F.186, A:F.186, A:V.188, A:I.215, C:A.24 Hydrogen bonds: A:L.106, A:S.126, A:Y.128, A:H.245 SDZ.2: 16 residues within 4Å: Chain E: I.104, L.106, F.124, S.126, Y.128, Y.152, P.174, V.176, F.186, V.188, V.191, Y.197, I.215, M.224, H.245 Chain G: A.24 14 PLIP interactions: 13 interactions with chain E, 1 interactions with chain G Hydrophobic interactions: E:I.104, E:Y.152, E:Y.152, E:P.174, E:V.176, E:F.186, E:F.186, E:V.188, E:I.215, G:A.24 Hydrogen bonds: E:L.106, E:S.126, E:Y.128, E:H.245 SDZ.3: 16 residues within 4Å: Chain I: I.104, L.106, F.124, S.126, Y.128, Y.152, P.174, V.176, F.186, V.188, V.191, Y.197, I.215, M.224, H.245 Chain K: A.24 14 PLIP interactions: 13 interactions with chain I, 1 interactions with chain K Hydrophobic interactions: I:I.104, I:Y.152, I:Y.152, I:P.174, I:V.176, I:F.186, I:F.186, I:V.188, I:I.215, K:A.24 Hydrogen bonds: I:L.106, I:S.126, I:Y.128, I:H.245 SDZ.4: 16 residues within 4Å: Chain M: I.104, L.106, F.124, S.126, Y.128, Y.152, P.174, V.176, F.186, V.188, V.191, Y.197, I.215, M.224, H.245 Chain O: A.24 14 PLIP interactions: 13 interactions with chain M, 1 interactions with chain O Hydrophobic interactions: M:I.104, M:Y.152, M:Y.152, M:P.174, M:V.176, M:F.186, M:F.186, M:V.188, M:I.215, O:A.24 Hydrogen bonds: M:L.106, M:S.126, M:Y.128, M:H.245 SDZ.5: 16 residues within 4Å: Chain Q: I.104, L.106, F.124, S.126, Y.128, Y.152, P.174, V.176, F.186, V.188, V.191, Y.197, I.215, M.224, H.245 Chain S: A.24 14 PLIP interactions: 13 interactions with chain Q, 1 interactions with chain S Hydrophobic interactions: Q:I.104, Q:Y.152, Q:Y.152, Q:P.174, Q:V.176, Q:F.186, Q:F.186, Q:V.188, Q:I.215, S:A.24 Hydrogen bonds: Q:L.106, Q:S.126, Q:Y.128, Q:H.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rosenwirth, B. et al., SDZ 35-682, a new picornavirus capsid-binding agent with potent antiviral activity. Antiviral Res. (1995)

Release Date

1995-06-03

Peptides

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1): AEIMQ
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2): BFJNR
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3): CGKOS
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4): DHLPT

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

E
1

I
1

M
1

Q
1

B
2

F
2

J
2

N
2

R
2

C
3

G
3

K
3

O
3

S
3

D
4

H
4

L
4

P
4

T
4

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2)

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3)

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4)

Related Entries With Identical Sequence