SMTL ID : 1r08.1 (3 other biounits)

STRUCTURAL ANALYSIS OF ANTIVIRAL AGENTS THAT INTERACT WITH THE CAPSID OF HUMAN RHINOVIRUSES

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x W42: 5-(5-(2,6-DICHLORO-4-(4,5-DIHYDRO-2-OXAZOLYL)PHENOXY)PENTYL)-3-(HYDROXYETHYL OXYMETHYLENEOXYMETHYL) ISOXAZOLE(Non-covalent)

W42.1: 20 residues within 4Å: Chain A: I.104, L.106, S.107, L.116, Y.128, A.150, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, C.199, N.219, M.221, M.224 Chain C: A.24, L.25 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.104, A:L.106, A:Y.152, A:F.186, A:V.191 Hydrogen bonds: A:S.107, A:S.107, A:N.219 pi-Stacking: A:Y.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Badger, J. et al., Structural analysis of antiviral agents that interact with the capsid of human rhinoviruses. Proteins (1989)

Release Date

1990-01-15

Peptides

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1): A
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2): B
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3): C
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4): D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
2

C
3

D
4

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2)

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3)

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4)

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