SMTL ID : 1hrv.3 (3 other biounits)

HRV14/SDZ 35-682 COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-6-6-6-6-mer

Ligands

6 x SDZ: 1-[2-HYDROXY-3-(4-CYCLOHEXYL-PHENOXY)-PROPYL]-4-(2-PYRIDYL)-PIPERAZINE(Non-covalent)

SDZ.1: 16 residues within 4Å: Chain A: I.104, L.106, F.124, S.126, Y.128, Y.152, P.174, V.176, F.186, V.188, V.191, Y.197, I.215, M.224, H.245 Chain C: A.24 14 PLIP interactions: 13 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:I.104, A:Y.152, A:Y.152, A:P.174, A:V.176, A:F.186, A:F.186, A:V.188, A:I.215, C:A.24 Hydrogen bonds: A:L.106, A:S.126, A:Y.128, A:H.245 SDZ.2: 16 residues within 4Å: Chain E: I.104, L.106, F.124, S.126, Y.128, Y.152, P.174, V.176, F.186, V.188, V.191, Y.197, I.215, M.224, H.245 Chain G: A.24 14 PLIP interactions: 13 interactions with chain E, 1 interactions with chain G Hydrophobic interactions: E:I.104, E:Y.152, E:Y.152, E:P.174, E:V.176, E:F.186, E:F.186, E:V.188, E:I.215, G:A.24 Hydrogen bonds: E:L.106, E:S.126, E:Y.128, E:H.245 SDZ.3: 16 residues within 4Å: Chain I: I.104, L.106, F.124, S.126, Y.128, Y.152, P.174, V.176, F.186, V.188, V.191, Y.197, I.215, M.224, H.245 Chain K: A.24 14 PLIP interactions: 13 interactions with chain I, 1 interactions with chain K Hydrophobic interactions: I:I.104, I:Y.152, I:Y.152, I:P.174, I:V.176, I:F.186, I:F.186, I:V.188, I:I.215, K:A.24 Hydrogen bonds: I:L.106, I:S.126, I:Y.128, I:H.245 SDZ.4: 16 residues within 4Å: Chain M: I.104, L.106, F.124, S.126, Y.128, Y.152, P.174, V.176, F.186, V.188, V.191, Y.197, I.215, M.224, H.245 Chain O: A.24 14 PLIP interactions: 1 interactions with chain O, 13 interactions with chain M Hydrophobic interactions: O:A.24, M:I.104, M:Y.152, M:Y.152, M:P.174, M:V.176, M:F.186, M:F.186, M:V.188, M:I.215 Hydrogen bonds: M:L.106, M:S.126, M:Y.128, M:H.245 SDZ.5: 16 residues within 4Å: Chain Q: I.104, L.106, F.124, S.126, Y.128, Y.152, P.174, V.176, F.186, V.188, V.191, Y.197, I.215, M.224, H.245 Chain S: A.24 14 PLIP interactions: 13 interactions with chain Q, 1 interactions with chain S Hydrophobic interactions: Q:I.104, Q:Y.152, Q:Y.152, Q:P.174, Q:V.176, Q:F.186, Q:F.186, Q:V.188, Q:I.215, S:A.24 Hydrogen bonds: Q:L.106, Q:S.126, Q:Y.128, Q:H.245 SDZ.6: 16 residues within 4Å: Chain U: I.104, L.106, F.124, S.126, Y.128, Y.152, P.174, V.176, F.186, V.188, V.191, Y.197, I.215, M.224, H.245 Chain W: A.24 14 PLIP interactions: 13 interactions with chain U, 1 interactions with chain W Hydrophobic interactions: U:I.104, U:Y.152, U:Y.152, U:P.174, U:V.176, U:F.186, U:F.186, U:V.188, U:I.215, W:A.24 Hydrogen bonds: U:L.106, U:S.126, U:Y.128, U:H.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rosenwirth, B. et al., SDZ 35-682, a new picornavirus capsid-binding agent with potent antiviral activity. Antiviral Res. (1995)

Release Date

1995-06-03

Peptides

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1): AEIMQU
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2): BFJNRV
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3): CGKOSW
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4): DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

E
1

I
1

M
1

Q
1

U
1

B
2

F
2

J
2

N
2

R
2

V
2

C
3

G
3

K
3

O
3

S
3

W
3

D
4

H
4

L
4

P
4

T
4

X
4

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2)

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3)

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4)

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