SMTL ID : 4pdw.1 (3 other biounits)

A benzonitrile analogue inhibits rhinovirus replication

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: A.196, Y.197, N.198, L.218, N.219, M.221 Ligands: 2XK.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.198, A:N.198 GOL.2: 3 residues within 4Å: Chain A: V.79, L.109 Chain C: Q.230 No protein-ligand interaction detected (PLIP) GOL.4: 4 residues within 4Å: Chain B: D.88, F.97, K.257, S.258 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.88, B:K.257 GOL.5: 9 residues within 4Å: Chain C: L.71, N.72, A.73, L.195, L.197, T.202, G.203, Q.204, V.205 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:A.73, C:T.202, C:V.205

1 x 2XK: 4-[(4,5-dimethoxy-2-nitrophenyl)acetyl]benzonitrile(Non-covalent)

2XK.3: 13 residues within 4Å: Chain A: I.104, L.106, S.126, Y.128, Y.152, F.186, V.188, V.191, Y.197, M.221, M.224 Chain C: L.25 Ligands: GOL.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.104, A:L.106, A:Y.128, A:Y.197, A:Y.197 Hydrogen bonds: A:S.126 pi-Stacking: A:Y.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lacroix, C. et al., A novel benzonitrile analogue inhibits rhinovirus replication. J.Antimicrob.Chemother. (2014)

Release Date

2014-07-02

Peptides

Genome polyprotein: A
Genome polyprotein: B
Genome polyprotein: C
Capsid protein VP4/VP2: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Genome polyprotein

Genome polyprotein

Genome polyprotein

Capsid protein VP4/VP2

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