SMTL ID : 1vrh.3 (3 other biounits)

HRV14/SDZ 880-061 COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-6-6-6-6-mer

Ligands

6 x SD8: 2-[4-(2H-1,4-BENZOTHIAZINE-3-YL)-PIPERAZINE-1-LY]-1,3-THIAZOLE-4-CARBOXYLIC ACID ETHYLESTER(Non-covalent)

SD8.1: 13 residues within 4Å: Chain A: I.104, L.106, S.107, R.113, E.117, F.124, S.126, Y.128, Y.152, V.188, V.191, Y.197, M.221 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.104, A:R.113, A:E.117, A:Y.128, A:Y.152, A:V.188 Hydrogen bonds: A:L.106, A:S.107, A:Y.128 pi-Stacking: A:Y.197 SD8.2: 13 residues within 4Å: Chain E: I.104, L.106, S.107, R.113, E.117, F.124, S.126, Y.128, Y.152, V.188, V.191, Y.197, M.221 10 PLIP interactions: 10 interactions with chain E Hydrophobic interactions: E:I.104, E:R.113, E:E.117, E:Y.128, E:Y.152, E:V.188 Hydrogen bonds: E:L.106, E:S.107, E:Y.128 pi-Stacking: E:Y.197 SD8.3: 13 residues within 4Å: Chain I: I.104, L.106, S.107, R.113, E.117, F.124, S.126, Y.128, Y.152, V.188, V.191, Y.197, M.221 10 PLIP interactions: 10 interactions with chain I Hydrophobic interactions: I:I.104, I:R.113, I:E.117, I:Y.128, I:Y.152, I:V.188 Hydrogen bonds: I:L.106, I:S.107, I:Y.128 pi-Stacking: I:Y.197 SD8.4: 13 residues within 4Å: Chain M: I.104, L.106, S.107, R.113, E.117, F.124, S.126, Y.128, Y.152, V.188, V.191, Y.197, M.221 10 PLIP interactions: 10 interactions with chain M Hydrophobic interactions: M:I.104, M:R.113, M:E.117, M:Y.128, M:Y.152, M:V.188 Hydrogen bonds: M:L.106, M:S.107, M:Y.128 pi-Stacking: M:Y.197 SD8.5: 13 residues within 4Å: Chain Q: I.104, L.106, S.107, R.113, E.117, F.124, S.126, Y.128, Y.152, V.188, V.191, Y.197, M.221 10 PLIP interactions: 10 interactions with chain Q Hydrophobic interactions: Q:I.104, Q:R.113, Q:E.117, Q:Y.128, Q:Y.152, Q:V.188 Hydrogen bonds: Q:L.106, Q:S.107, Q:Y.128 pi-Stacking: Q:Y.197 SD8.6: 13 residues within 4Å: Chain U: I.104, L.106, S.107, R.113, E.117, F.124, S.126, Y.128, Y.152, V.188, V.191, Y.197, M.221 10 PLIP interactions: 10 interactions with chain U Hydrophobic interactions: U:I.104, U:R.113, U:E.117, U:Y.128, U:Y.152, U:V.188 Hydrogen bonds: U:L.106, U:S.107, U:Y.128 pi-Stacking: U:Y.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oren, D.A. et al., Synthesis and activity of piperazine-containing antirhinoviral agents and crystal structure of SDZ 880-061 bound to human rhinovirus 14. J.Mol.Biol. (1996)

Release Date

1997-02-12

Peptides

RHINOVIRUS 14: AEIMQU
RHINOVIRUS 14: BFJNRV
RHINOVIRUS 14: CGKOSW
RHINOVIRUS 14: DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

E
1

I
1

M
1

Q
1

U
1

B
2

F
2

J
2

N
2

R
2

V
2

C
3

G
3

K
3

O
3

S
3

W
3

D
4

H
4

L
4

P
4

T
4

X
4

RHINOVIRUS 14

RHINOVIRUS 14

RHINOVIRUS 14

RHINOVIRUS 14

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