SMTL ID : 1r08.3 (3 other biounits)

STRUCTURAL ANALYSIS OF ANTIVIRAL AGENTS THAT INTERACT WITH THE CAPSID OF HUMAN RHINOVIRUSES

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-6-6-6-6-mer

Ligands

6 x W42: 5-(5-(2,6-DICHLORO-4-(4,5-DIHYDRO-2-OXAZOLYL)PHENOXY)PENTYL)-3-(HYDROXYETHYL OXYMETHYLENEOXYMETHYL) ISOXAZOLE(Non-covalent)

W42.1: 21 residues within 4Å: Chain A: I.104, L.106, S.107, L.116, Y.128, A.150, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, C.199, N.219, M.221, M.224 Chain C: A.24, L.25 Chain G: L.14 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.104, A:L.106, A:Y.152, A:F.186, A:V.191 Hydrogen bonds: A:S.107, A:S.107, A:N.219 pi-Stacking: A:Y.197 W42.2: 20 residues within 4Å: Chain E: I.104, L.106, S.107, L.116, Y.128, A.150, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, C.199, N.219, M.221, M.224 Chain G: A.24, L.25 9 PLIP interactions: 9 interactions with chain E Hydrophobic interactions: E:I.104, E:L.106, E:Y.152, E:F.186, E:V.191 Hydrogen bonds: E:S.107, E:S.107, E:N.219 pi-Stacking: E:Y.197 W42.3: 20 residues within 4Å: Chain I: I.104, L.106, S.107, L.116, Y.128, A.150, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, C.199, N.219, M.221, M.224 Chain K: A.24, L.25 9 PLIP interactions: 9 interactions with chain I Hydrophobic interactions: I:I.104, I:L.106, I:Y.152, I:F.186, I:V.191 Hydrogen bonds: I:S.107, I:S.107, I:N.219 pi-Stacking: I:Y.197 W42.4: 21 residues within 4Å: Chain K: L.14 Chain M: I.104, L.106, S.107, L.116, Y.128, A.150, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, C.199, N.219, M.221, M.224 Chain O: A.24, L.25 9 PLIP interactions: 9 interactions with chain M Hydrophobic interactions: M:I.104, M:L.106, M:Y.152, M:F.186, M:V.191 Hydrogen bonds: M:S.107, M:S.107, M:N.219 pi-Stacking: M:Y.197 W42.5: 21 residues within 4Å: Chain Q: I.104, L.106, S.107, L.116, Y.128, A.150, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, C.199, N.219, M.221, M.224 Chain S: A.24, L.25 Chain W: L.14 9 PLIP interactions: 9 interactions with chain Q Hydrophobic interactions: Q:I.104, Q:L.106, Q:Y.152, Q:F.186, Q:V.191 Hydrogen bonds: Q:S.107, Q:S.107, Q:N.219 pi-Stacking: Q:Y.197 W42.6: 20 residues within 4Å: Chain U: I.104, L.106, S.107, L.116, Y.128, A.150, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, C.199, N.219, M.221, M.224 Chain W: A.24, L.25 9 PLIP interactions: 9 interactions with chain U Hydrophobic interactions: U:I.104, U:L.106, U:Y.152, U:F.186, U:V.191 Hydrogen bonds: U:S.107, U:S.107, U:N.219 pi-Stacking: U:Y.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Badger, J. et al., Structural analysis of antiviral agents that interact with the capsid of human rhinoviruses. Proteins (1989)

Release Date

1990-01-15

Peptides

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1): AEIMQU
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2): BFJNRV
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3): CGKOSW
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4): DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

E
1

I
1

M
1

Q
1

U
1

B
2

F
2

J
2

N
2

R
2

V
2

C
3

G
3

K
3

O
3

S
3

W
3

D
4

H
4

L
4

P
4

T
4

X
4

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2)

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3)

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4)

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