SMTL ID : 1k5m.1 (4 other biounits)

Crystal Structure of a Human Rhinovirus Type 14:Human Immunodeficiency Virus Type 1 V3 Loop Chimeric Virus MN-III-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x SPH: SPHINGOSINE(Non-covalent)

SPH.1: 13 residues within 4Å: Chain A: L.106, S.107, L.116, V.122, Y.128, Y.152, V.176, F.186, V.188, Y.197, N.198, C.199 Chain C: A.24 16 PLIP interactions: 1 interactions with chain C, 15 interactions with chain A Hydrophobic interactions: C:A.24, A:L.106, A:Y.152, A:Y.152, A:Y.152, A:Y.152, A:V.176, A:F.186, A:F.186, A:V.188, A:Y.197, A:Y.197 Hydrogen bonds: A:L.106, A:S.107 Water bridges: A:S.107, A:N.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ding, J. et al., Crystal Structure of a Human Rhinovirus that Displays Part of the HIV-1 V3 Loop and Induces Neutralizing Antibodies against HIV-1. Structure (2002)

Release Date

2002-07-17

Peptides

COAT PROTEIN VP1 (P1D): A
CHIMERA OF HRV14 COAT PROTEIN VP2 (P1B) AND the V3 loop of HIV-1 gp120: B
COAT PROTEIN VP3 (P1C): C
COAT PROTEIN VP4 (P1A): D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

COAT PROTEIN VP1 (P1D)

CHIMERA OF HRV14 COAT PROTEIN VP2 (P1B) AND the V3 loop of HIV-1 gp120

COAT PROTEIN VP3 (P1C)

COAT PROTEIN VP4 (P1A)

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