SMTL ID : 2hwc.3 (3 other biounits)

A COMPARISON OF THE ANTI-RHINOVIRAL DRUG BINDING POCKET IN HRV14 AND HRV1A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-6-6-6-6-mer

Ligands

6 x W54: 5-(5-(2,6-DICHLORO-4-(4,5-DIHYDRO-2-OXAZOLY)PHENOXY)PENTYL)-3-METHYL ISOXAZOLE(Non-covalent)

W54.1: 17 residues within 4Å: Chain A: I.104, L.106, Y.128, A.150, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, N.219, M.221, M.224 Chain C: A.24, L.25 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:I.104, A:L.106, A:Y.152, A:F.186, A:V.191, A:Y.197, A:Y.197, C:A.24 pi-Stacking: A:Y.152 W54.2: 17 residues within 4Å: Chain E: I.104, L.106, Y.128, A.150, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, N.219, M.221, M.224 Chain G: A.24, L.25 9 PLIP interactions: 8 interactions with chain E, 1 interactions with chain G Hydrophobic interactions: E:I.104, E:L.106, E:Y.152, E:F.186, E:V.191, E:Y.197, E:Y.197, G:A.24 pi-Stacking: E:Y.152 W54.3: 17 residues within 4Å: Chain I: I.104, L.106, Y.128, A.150, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, N.219, M.221, M.224 Chain K: A.24, L.25 9 PLIP interactions: 8 interactions with chain I, 1 interactions with chain K Hydrophobic interactions: I:I.104, I:L.106, I:Y.152, I:F.186, I:V.191, I:Y.197, I:Y.197, K:A.24 pi-Stacking: I:Y.152 W54.4: 17 residues within 4Å: Chain M: I.104, L.106, Y.128, A.150, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, N.219, M.221, M.224 Chain O: A.24, L.25 9 PLIP interactions: 8 interactions with chain M, 1 interactions with chain O Hydrophobic interactions: M:I.104, M:L.106, M:Y.152, M:F.186, M:V.191, M:Y.197, M:Y.197, O:A.24 pi-Stacking: M:Y.152 W54.5: 17 residues within 4Å: Chain Q: I.104, L.106, Y.128, A.150, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, N.219, M.221, M.224 Chain S: A.24, L.25 9 PLIP interactions: 8 interactions with chain Q, 1 interactions with chain S Hydrophobic interactions: Q:I.104, Q:L.106, Q:Y.152, Q:F.186, Q:V.191, Q:Y.197, Q:Y.197, S:A.24 pi-Stacking: Q:Y.152 W54.6: 17 residues within 4Å: Chain U: I.104, L.106, Y.128, A.150, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, N.219, M.221, M.224 Chain W: A.24, L.25 9 PLIP interactions: 8 interactions with chain U, 1 interactions with chain W Hydrophobic interactions: U:I.104, U:L.106, U:Y.152, U:F.186, U:V.191, U:Y.197, U:Y.197, W:A.24 pi-Stacking: U:Y.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, K.H. et al., A comparison of the anti-rhinoviral drug binding pocket in HRV14 and HRV1A. J.Mol.Biol. (1993)

Release Date

1994-11-01

Peptides

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1): AEIMQU
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2): BFJNRV
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3): CGKOSW
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4): DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

E
1

I
1

M
1

Q
1

U
1

B
2

F
2

J
2

N
2

R
2

V
2

C
3

G
3

K
3

O
3

S
3

W
3

D
4

H
4

L
4

P
4

T
4

X
4

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2)

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3)

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4)

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