SMTL ID : 1na1.3 (3 other biounits)

The structure of HRV14 when complexed with Pleconaril

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-6-6-6-6-mer

Ligands

6 x W11: 3-{3,5-DIMETHYL-4-[3-(3-METHYL-ISOXAZOL-5-YL)-PROPOXY]-PHENYL}-5-TRIFLUOROMETHYL-[1,2,4]OXADIAZOLE(Non-covalent)

W11.1: 17 residues within 4Å: Chain A: I.104, L.106, Y.128, A.150, M.151, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, N.219, M.221, M.224 Chain C: A.24 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.104, A:Y.128, A:Y.152, A:Y.152, A:V.188, A:V.188, A:V.191, A:Y.197 Hydrogen bonds: A:Y.128 Water bridges: A:N.219 pi-Stacking: A:Y.152 Halogen bonds: A:P.174 W11.2: 17 residues within 4Å: Chain E: I.104, L.106, Y.128, A.150, M.151, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, N.219, M.221, M.224 Chain G: A.24 12 PLIP interactions: 12 interactions with chain E Hydrophobic interactions: E:I.104, E:Y.128, E:Y.152, E:Y.152, E:V.188, E:V.188, E:V.191, E:Y.197 Hydrogen bonds: E:Y.128 Water bridges: E:N.219 pi-Stacking: E:Y.152 Halogen bonds: E:P.174 W11.3: 17 residues within 4Å: Chain I: I.104, L.106, Y.128, A.150, M.151, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, N.219, M.221, M.224 Chain K: A.24 12 PLIP interactions: 12 interactions with chain I Hydrophobic interactions: I:I.104, I:Y.128, I:Y.152, I:Y.152, I:V.188, I:V.188, I:V.191, I:Y.197 Hydrogen bonds: I:Y.128 Water bridges: I:N.219 pi-Stacking: I:Y.152 Halogen bonds: I:P.174 W11.4: 17 residues within 4Å: Chain M: I.104, L.106, Y.128, A.150, M.151, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, N.219, M.221, M.224 Chain O: A.24 12 PLIP interactions: 12 interactions with chain M Hydrophobic interactions: M:I.104, M:Y.128, M:Y.152, M:Y.152, M:V.188, M:V.188, M:V.191, M:Y.197 Hydrogen bonds: M:Y.128 Water bridges: M:N.219 pi-Stacking: M:Y.152 Halogen bonds: M:P.174 W11.5: 17 residues within 4Å: Chain Q: I.104, L.106, Y.128, A.150, M.151, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, N.219, M.221, M.224 Chain S: A.24 12 PLIP interactions: 12 interactions with chain Q Hydrophobic interactions: Q:I.104, Q:Y.128, Q:Y.152, Q:Y.152, Q:V.188, Q:V.188, Q:V.191, Q:Y.197 Hydrogen bonds: Q:Y.128 Water bridges: Q:N.219 pi-Stacking: Q:Y.152 Halogen bonds: Q:P.174 W11.6: 17 residues within 4Å: Chain U: I.104, L.106, Y.128, A.150, M.151, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, N.219, M.221, M.224 Chain W: A.24 12 PLIP interactions: 12 interactions with chain U Hydrophobic interactions: U:I.104, U:Y.128, U:Y.152, U:Y.152, U:V.188, U:V.188, U:V.191, U:Y.197 Hydrogen bonds: U:Y.128 Water bridges: U:N.219 pi-Stacking: U:Y.152 Halogen bonds: U:P.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Structural and virological studies of the stages of virus replication that are affected by antirhinovirus compounds. J.Virol. (2004)

Release Date

2003-12-16

Peptides

Coat protein VP1: AEIMQU
Coat protein VP2: BFJNRV
Coat protein VP3: CGKOSW
Coat protein VP4: DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

U
A

B
B

F
B

J
B

N
B

R
B

V
B

C
C

G
C

K
C

O
C

S
C

W
C

D
D

H
D

L
D

P
D

T
D

X
D

Coat protein VP1

Coat protein VP2

Coat protein VP3

Coat protein VP4

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