SMTL ID : 1ncq.2 (3 other biounits)

The structure of HRV14 when complexed with pleconaril, an antiviral compound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-5-5-5-5-mer

Ligands

5 x W11: 3-{3,5-DIMETHYL-4-[3-(3-METHYL-ISOXAZOL-5-YL)-PROPOXY]-PHENYL}-5-TRIFLUOROMETHYL-[1,2,4]OXADIAZOLE(Non-covalent)

W11.1: 18 residues within 4Å: Chain A: I.104, L.106, Y.128, A.150, M.151, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, N.219, M.221, M.224 Chain C: A.24, L.25 13 PLIP interactions: 12 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:I.104, A:I.104, A:L.106, A:Y.128, A:Y.152, A:V.188, A:V.188, A:V.191, A:Y.197, C:L.25 Water bridges: A:N.219 pi-Stacking: A:Y.152 Halogen bonds: A:P.174 W11.2: 18 residues within 4Å: Chain E: I.104, L.106, Y.128, A.150, M.151, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, N.219, M.221, M.224 Chain G: A.24, L.25 13 PLIP interactions: 12 interactions with chain E, 1 interactions with chain G Hydrophobic interactions: E:I.104, E:I.104, E:L.106, E:Y.128, E:Y.152, E:V.188, E:V.188, E:V.191, E:Y.197, G:L.25 Water bridges: E:N.219 pi-Stacking: E:Y.152 Halogen bonds: E:P.174 W11.3: 18 residues within 4Å: Chain I: I.104, L.106, Y.128, A.150, M.151, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, N.219, M.221, M.224 Chain K: A.24, L.25 13 PLIP interactions: 12 interactions with chain I, 1 interactions with chain K Hydrophobic interactions: I:I.104, I:I.104, I:L.106, I:Y.128, I:Y.152, I:V.188, I:V.188, I:V.191, I:Y.197, K:L.25 Water bridges: I:N.219 pi-Stacking: I:Y.152 Halogen bonds: I:P.174 W11.4: 18 residues within 4Å: Chain M: I.104, L.106, Y.128, A.150, M.151, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, N.219, M.221, M.224 Chain O: A.24, L.25 13 PLIP interactions: 12 interactions with chain M, 1 interactions with chain O Hydrophobic interactions: M:I.104, M:I.104, M:L.106, M:Y.128, M:Y.152, M:V.188, M:V.188, M:V.191, M:Y.197, O:L.25 Water bridges: M:N.219 pi-Stacking: M:Y.152 Halogen bonds: M:P.174 W11.5: 18 residues within 4Å: Chain Q: I.104, L.106, Y.128, A.150, M.151, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, N.219, M.221, M.224 Chain S: A.24, L.25 13 PLIP interactions: 12 interactions with chain Q, 1 interactions with chain S Hydrophobic interactions: Q:I.104, Q:I.104, Q:L.106, Q:Y.128, Q:Y.152, Q:V.188, Q:V.188, Q:V.191, Q:Y.197, S:L.25 Water bridges: Q:N.219 pi-Stacking: Q:Y.152 Halogen bonds: Q:P.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Structural and virological studies of the stages of virus replication that are affected by antirhinovirus compounds. J.Virol. (2004)

Release Date

2003-12-16

Peptides

COAT PROTEIN VP1: AEIMQ
COAT PROTEIN VP2: BFJNR
COAT PROTEIN VP3: CGKOS
COAT PROTEIN VP4: DHLPT

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

B
B

F
B

J
B

N
B

R
B

C
C

G
C

K
C

O
C

S
C

D
D

H
D

L
D

P
D

T
D

COAT PROTEIN VP1

COAT PROTEIN VP2

COAT PROTEIN VP3

COAT PROTEIN VP4

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