SMTL ID : 1r09.3 (3 other biounits)

HUMAN RHINOVIRUS 14 COMPLEXED WITH ANTIVIRAL COMPOUND R 61837

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-6-6-6-6-mer

Ligands

6 x JEN: 3-METHOXY-6-[4-(3-METHYLPHENYL)-1-PIPERAZINYL]PYRIDAZINE(Non-covalent)

JEN.1: 14 residues within 4Å: Chain A: I.104, L.106, F.124, S.126, Y.128, Y.152, V.188, V.191, Y.197, N.198, N.219, M.221, M.224 Ligands: DMS.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.104, A:F.124, A:Y.128, A:V.188, A:V.188, A:V.191, A:Y.197, A:Y.197 Hydrogen bonds: A:N.219 Water bridges: A:L.106 pi-Stacking: A:Y.152 JEN.3: 14 residues within 4Å: Chain E: I.104, L.106, F.124, S.126, Y.128, Y.152, V.188, V.191, Y.197, N.198, N.219, M.221, M.224 Ligands: DMS.4 11 PLIP interactions: 11 interactions with chain E Hydrophobic interactions: E:I.104, E:F.124, E:Y.128, E:V.188, E:V.188, E:V.191, E:Y.197, E:Y.197 Hydrogen bonds: E:N.219 Water bridges: E:L.106 pi-Stacking: E:Y.152 JEN.5: 14 residues within 4Å: Chain I: I.104, L.106, F.124, S.126, Y.128, Y.152, V.188, V.191, Y.197, N.198, N.219, M.221, M.224 Ligands: DMS.6 11 PLIP interactions: 11 interactions with chain I Hydrophobic interactions: I:I.104, I:F.124, I:Y.128, I:V.188, I:V.188, I:V.191, I:Y.197, I:Y.197 Hydrogen bonds: I:N.219 Water bridges: I:L.106 pi-Stacking: I:Y.152 JEN.7: 14 residues within 4Å: Chain M: I.104, L.106, F.124, S.126, Y.128, Y.152, V.188, V.191, Y.197, N.198, N.219, M.221, M.224 Ligands: DMS.8 11 PLIP interactions: 11 interactions with chain M Hydrophobic interactions: M:I.104, M:F.124, M:Y.128, M:V.188, M:V.188, M:V.191, M:Y.197, M:Y.197 Hydrogen bonds: M:N.219 Water bridges: M:L.106 pi-Stacking: M:Y.152 JEN.9: 14 residues within 4Å: Chain Q: I.104, L.106, F.124, S.126, Y.128, Y.152, V.188, V.191, Y.197, N.198, N.219, M.221, M.224 Ligands: DMS.10 11 PLIP interactions: 11 interactions with chain Q Hydrophobic interactions: Q:I.104, Q:F.124, Q:Y.128, Q:V.188, Q:V.188, Q:V.191, Q:Y.197, Q:Y.197 Hydrogen bonds: Q:N.219 Water bridges: Q:L.106 pi-Stacking: Q:Y.152 JEN.11: 14 residues within 4Å: Chain U: I.104, L.106, F.124, S.126, Y.128, Y.152, V.188, V.191, Y.197, N.198, N.219, M.221, M.224 Ligands: DMS.12 11 PLIP interactions: 11 interactions with chain U Hydrophobic interactions: U:I.104, U:F.124, U:Y.128, U:V.188, U:V.188, U:V.191, U:Y.197, U:Y.197 Hydrogen bonds: U:N.219 Water bridges: U:L.106 pi-Stacking: U:Y.152

6 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 7 residues within 4Å: Chain A: Y.197, N.198, I.215, L.218, N.219, M.221 Ligands: JEN.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.219 DMS.4: 7 residues within 4Å: Chain E: Y.197, N.198, I.215, L.218, N.219, M.221 Ligands: JEN.3 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.219 DMS.6: 7 residues within 4Å: Chain I: Y.197, N.198, I.215, L.218, N.219, M.221 Ligands: JEN.5 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:N.219 DMS.8: 7 residues within 4Å: Chain M: Y.197, N.198, I.215, L.218, N.219, M.221 Ligands: JEN.7 1 PLIP interactions: 1 interactions with chain M Hydrogen bonds: M:N.219 DMS.10: 7 residues within 4Å: Chain Q: Y.197, N.198, I.215, L.218, N.219, M.221 Ligands: JEN.9 1 PLIP interactions: 1 interactions with chain Q Hydrogen bonds: Q:N.219 DMS.12: 7 residues within 4Å: Chain U: Y.197, N.198, I.215, L.218, N.219, M.221 Ligands: JEN.11 1 PLIP interactions: 1 interactions with chain U Hydrogen bonds: U:N.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chapman, M.S. et al., Human rhinovirus 14 complexed with antiviral compound R 61837. J.Mol.Biol. (1991)

Release Date

1991-10-15

Peptides

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1): AEIMQU
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2): BFJNRV
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3): CGKOSW
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4): DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

E
1

I
1

M
1

Q
1

U
1

B
2

F
2

J
2

N
2

R
2

V
2

C
3

G
3

K
3

O
3

S
3

W
3

D
4

H
4

L
4

P
4

T
4

X
4

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2)

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3)

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4)

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