SMTL ID : 2rm2.2 (3 other biounits)

STRUCTURAL ANALYSIS OF ANTIVIRAL AGENTS THAT INTERACT WITH THE CAPSID OF HUMAN RHINOVIRUSES

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-5-5-5-5-mer

Ligands

5 x W43: 5-(7-(6-CHLORO-4-(5-HYDRO-4-METHYL-2-OXAZOLYL)PHENOXY)HEPTYL)-3-METHYL ISOXAZOLE(Non-covalent)

W43.1: 19 residues within 4Å: Chain A: I.104, N.105, L.106, V.122, Y.128, A.150, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, N.198, C.199, N.219, M.221 Chain C: A.24 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.104, A:L.106, A:Y.128, A:Y.152, A:Y.152, A:Y.152, A:V.176, A:V.188, A:V.191 Hydrogen bonds: A:Y.128, A:N.219 pi-Stacking: A:F.186, A:Y.197 W43.2: 19 residues within 4Å: Chain E: I.104, N.105, L.106, V.122, Y.128, A.150, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, N.198, C.199, N.219, M.221 Chain G: A.24 13 PLIP interactions: 13 interactions with chain E Hydrophobic interactions: E:I.104, E:L.106, E:Y.128, E:Y.152, E:Y.152, E:Y.152, E:V.176, E:V.188, E:V.191 Hydrogen bonds: E:Y.128, E:N.219 pi-Stacking: E:F.186, E:Y.197 W43.3: 19 residues within 4Å: Chain I: I.104, N.105, L.106, V.122, Y.128, A.150, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, N.198, C.199, N.219, M.221 Chain K: A.24 13 PLIP interactions: 13 interactions with chain I Hydrophobic interactions: I:I.104, I:L.106, I:Y.128, I:Y.152, I:Y.152, I:Y.152, I:V.176, I:V.188, I:V.191 Hydrogen bonds: I:Y.128, I:N.219 pi-Stacking: I:F.186, I:Y.197 W43.4: 19 residues within 4Å: Chain M: I.104, N.105, L.106, V.122, Y.128, A.150, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, N.198, C.199, N.219, M.221 Chain O: A.24 13 PLIP interactions: 13 interactions with chain M Hydrophobic interactions: M:I.104, M:L.106, M:Y.128, M:Y.152, M:Y.152, M:Y.152, M:V.176, M:V.188, M:V.191 Hydrogen bonds: M:Y.128, M:N.219 pi-Stacking: M:F.186, M:Y.197 W43.5: 19 residues within 4Å: Chain Q: I.104, N.105, L.106, V.122, Y.128, A.150, Y.152, P.174, S.175, V.176, F.186, V.188, V.191, Y.197, N.198, C.199, N.219, M.221 Chain S: A.24 13 PLIP interactions: 13 interactions with chain Q Hydrophobic interactions: Q:I.104, Q:L.106, Q:Y.128, Q:Y.152, Q:Y.152, Q:Y.152, Q:V.176, Q:V.188, Q:V.191 Hydrogen bonds: Q:Y.128, Q:N.219 pi-Stacking: Q:F.186, Q:Y.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Badger, J. et al., Structural analysis of antiviral agents that interact with the capsid of human rhinoviruses. Proteins (1989)

Release Date

1990-01-15

Peptides

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1): AEIMQ
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2): BFJNR
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3): CGKOS
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4): DHLPT

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

E
1

I
1

M
1

Q
1

B
2

F
2

J
2

N
2

R
2

C
3

G
3

K
3

O
3

S
3

D
4

H
4

L
4

P
4

T
4

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2)

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3)

HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4)

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