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SMTL ID : 2fov.1

Human Carbonic Anhydrase II complexed with two-prong inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.15 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

5 residues within 4Å:

Chain A: H.94, H.96, H.119, T.198
Ligands: B30.3

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x CU: COPPER (II) ION(Non-covalent)

CU.2:

2 residues within 4Å:

Chain A: S.2, H.3

1 PLIP interactions:

1 interactions with chain A

Metal complexes: A:H.3

2 x B30: {2,2'-[(2-{[4-(AMINOSULFONYL)BENZOYL]AMINO}ETHYL)IMINO]DIACETATO(2-)-KAPPAO}COPPER(Non-covalent)

B30.3:

16 residues within 4Å:

Chain A: W.5, N.62, H.64, N.67, Q.92, H.94, H.96, H.119, V.121, F.130, V.142, L.197, T.198, T.199, W.208
Ligands: ZN.1

14 PLIP interactions:

13 interactions with chain A, 1 Ligand-Water interactions

Hydrophobic interactions: A:V.121, A:L.197, A:L.197
Hydrogen bonds: A:Q.92, A:T.198, A:T.198
Water bridges: A:N.62, A:N.67, A:T.199, A:P.200
Salt bridges: A:H.64, A:H.64
Metal complexes: A:H.64, H₂O.9

B30.4:

9 residues within 4Å:

Chain A: H.4, W.5, H.10, N.11, H.15, W.16, K.18, D.19, F.20

11 PLIP interactions:

10 interactions with chain A, 1 Ligand-Ligand interactions

Hydrophobic interactions: A:H.4, A:N.11
Hydrogen bonds: A:H.4, A:H.10, A:W.16, A:D.19, A:D.19
Water bridges: A:W.5
Salt bridges: A:H.4, A:H.10
Metal complexes: B30.4

1 x CCN: ACETONITRILE(Non-functional Binders)

CCN.5:

3 residues within 4Å:

Chain A: G.150, S.151, S.216

2 PLIP interactions:

2 interactions with chain A

Hydrogen bonds: A:S.151, A:S.216

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Jude, K.M. et al., Ultrahigh resolution crystal structures of human carbonic anhydrases I and II complexed with two-prong inhibitors reveal the molecular basis of high affinity. J.Am.Chem.Soc. (2006)

Release Date

2006-04-04

Peptides

Carbonic Anhydrase II: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic Anhydrase II

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