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SMTL ID : 1a4w.1

CRYSTAL STRUCTURES OF THROMBIN WITH THIAZOLE-CONTAINING INHIBITORS: PROBES OF THE S1' BINDING SITE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1:	2 residues within 4Å: Chain B: R.233, K.236 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.236, B:K.236 Water bridges: B:G.238
NA.2:	2 residues within 4Å: Chain B: K.174, T.177 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.177

1 x QWE: amino{[(4S)-4-({[5-(dimethylamino)naphthalen-1-yl]sulfonyl}amino)-5-oxo-5-{(2R)-2-[3-oxo-3-(1,3-thiazol-2-yl)propyl]pip eridin-1-yl}pentyl]amino}methaniminium(Non-covalent)

QWE.3:

18 residues within 4Å:

Chain B: H.43, Y.47, W.50, K.52, E.94, L.96, D.199, A.200, C.201, E.202, S.205, S.226, W.227, G.228, E.229, G.230, C.231, G.238

15 PLIP interactions:

15 interactions with chain B

Hydrophobic interactions: B:W.50, B:W.50, B:L.96, B:W.227
Hydrogen bonds: B:S.205, B:S.226, B:G.228, B:G.228, B:G.230, B:G.230
Water bridges: B:S.226, B:E.229, B:F.239
Salt bridges: B:D.199
pi-Stacking: B:W.50

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Matthews, J.H. et al., Crystal structures of thrombin with thiazole-containing inhibitors: probes of the S1' binding site. Biophys.J. (1996)

Release Date

1998-04-29

Peptides

ALPHA-THROMBIN (SMALL SUBUNIT): A
ALPHA-THROMBIN (LARGE SUBUNIT): B
HIRUGEN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
I

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

ALPHA-THROMBIN (SMALL SUBUNIT)

ALPHA-THROMBIN (LARGE SUBUNIT)

HIRUGEN

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