SMTL ID : 1nrs.1

CRYSTALLOGRAPHIC STRUCTURES OF THROMBIN COMPLEXED WITH THROMBIN RECEPTOR PEPTIDES: EXISTENCE OF EXPECTED AND NOVEL BINDING MODES

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x LEU- ASP- PRO- ARG: RECEPTOR BASED PEPTIDE NRP(Non-covalent)

LEU-ASP-PRO-ARG.1: 17 residues within 4Å: Chain B: H.43, Y.47, W.50, E.94, N.95, L.96, D.199, A.200, C.201, S.205, S.226, W.227, G.228, E.229, G.230, C.231, G.238 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:Y.47, B:W.50, B:W.227, B:W.227 Hydrogen bonds: B:A.200, B:S.205, B:S.226, B:G.228, B:G.228, B:E.229, B:G.230, B:G.230 Water bridges: B:D.199, B:E.202, B:E.229, B:F.239, B:Y.240 Salt bridges: B:D.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mathews, I.I. et al., Crystallographic structures of thrombin complexed with thrombin receptor peptides: existence of expected and novel binding modes. Biochemistry (1994)

Release Date

1994-05-31

Peptides

ALPHA-THROMBIN (SMALL SUBUNIT): A
ALPHA-THROMBIN (LARGE SUBUNIT): B
HIRUGEN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
I

ALPHA-THROMBIN (SMALL SUBUNIT)

ALPHA-THROMBIN (LARGE SUBUNIT)

HIRUGEN

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