SMTL ID : 3hat.1

ACTIVE SITE MIMETIC INHIBITION OF THROMBIN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x RNG- GLY- VAL- ARG: FPAM (FIBRINOPEPTIDE A MIMIC)(Non-covalent)

RNG-GLY-VAL-ARG.1: 17 residues within 4Å: Chain B: H.43, Y.47, W.50, L.96, I.179, D.199, A.200, G.203, D.204, S.205, S.226, W.227, G.228, E.229, G.230, C.231, G.238 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:Y.47, B:W.50, B:L.96, B:I.179, B:W.227, B:E.229 Hydrogen bonds: B:A.200, B:G.203, B:S.205, B:S.205, B:S.226, B:G.228, B:G.228, B:G.230 Water bridges: B:W.227, B:G.230, B:G.230, B:F.239 Salt bridges: B:H.43, B:D.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mathews, I.I. et al., Active-site mimetic inhibition of thrombin. Acta Crystallogr.,Sect.D (1995)

Release Date

1995-02-27

Peptides

Thrombin light chain: A
Thrombin heavy chain: B
Hirudin variant-2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
I

Thrombin light chain

Thrombin heavy chain

Hirudin variant-2

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