SMTL ID : 6eo9.1

Crystal structure of thrombin in complex with a novel glucose-conjugated potent inhibitor

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.84 Å
Oligo State
hetero-1-1-1-mer
Ligands
6 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
1 x 2OJ: N-(2-{[5-(5-chlorothiophen-2-yl)-1,2-oxazol-3-yl]methoxy}-6-{3-[(2,3,4,6-tetra-O-acetyl-beta-D-glucopyranosyl)oxy]propoxy}phenyl)-1-(propan-2-yl)piperidine-4-carboxamide(Non-covalent)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Belviso, B.D. et al., How a beta-D-glucoside side chain enhances binding affinity to thrombin of inhibitors bearing 2-chlorothiophene as P1 moiety: crystallography, fragment deconstruction study, and evaluation of antithrombotic properties. J. Med. Chem. (2014)
Peptides
Prothrombin: A
Prothrombin: B
Hirudin variant-2: C
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
H
B
L
C
I

Prothrombin

Prothrombin

Hirudin variant-2

Related Entries With Identical Sequence

1a2c.1 | 1a3b.1 | 1a3e.1 | 1a46.1 | 1a4w.1 | 1a5g.1 | 1a61.1 | 1abi.1 | 1abj.1 | 1ad8.1 | 1ae8.1 | 1afe.1 | 1aht.1 | 1ai8.1 | 1aix.1 | 1awf.1 | 1awh.1 | 1awh.2 | 1ay6.1 | 1b5g.1 | 1b7x.1 | 1ba8.1 | 1bb0.1 | 1bcu.1 | 1bmm.1 | 1bmn.1 | 1bth.1 | 1bth.2 | 1c1u.1 | 1c1v.1  more...