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SMTL ID : 3c7p.1

Crystal structure of human carbonic anhydrase II in complex with STX237

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: POF.3

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2:

1 residues within 4Å:

Chain A: E.238

Ligand excluded by PLIP

1 x POF: (4aS,4bR,10bS,12aS)-12a-methyl-1,3-dioxo-2-(pyridin-3-ylmethyl)-1,2,3,4,4a,4b,5,6,10b,11,12,12a-dodecahydronaphtho[2,1-f]isoquinolin-8-yl sulfamate(Non-covalent)

POF.3:

15 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, V.121, F.130, G.131, V.134, Q.135, L.197, T.198, T.199, P.201
Ligands: ZN.1, GOL.5

11 PLIP interactions:

11 interactions with chain A

Hydrophobic interactions: A:F.130, A:F.130, A:V.134, A:L.197, A:L.197, A:T.199
Hydrogen bonds: A:Q.135, A:T.198
Water bridges: A:G.131
Salt bridges: A:H.94, A:H.119

1 x MBO: MERCURIBENZOIC ACID(Non-covalent)

MBO.4:

5 residues within 4Å:

Chain A: Q.135, Q.136, P.137, E.204, C.205

3 PLIP interactions:

3 interactions with chain A

Hydrophobic interactions: A:P.137
Metal complexes: A:Q.136, A:C.205

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5:

8 residues within 4Å:

Chain A: N.62, H.64, A.65, N.67, Q.92, H.94, T.199
Ligands: POF.3

6 PLIP interactions:

6 interactions with chain A

Hydrogen bonds: A:N.62, A:N.67, A:N.67, A:Q.92
Water bridges: A:N.67, A:T.199

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Woo, L.W.L. et al., Anticancer steroid sulfatase inhibitors: synthesis of a potent fluorinated second-generation agent, in vitro and in vivo activities, molecular modeling, and protein crystallography. Mol.Cancer Ther. (2008)

Release Date

2009-01-13

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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