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SMTL ID : 3caj.1

Crystal structure of the human carbonic anhydrase II in complex with ethoxzolamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: EZL.3

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2:

1 residues within 4Å:

Chain A: E.238

Ligand excluded by PLIP

1 x EZL: 6-ethoxy-1,3-benzothiazole-2-sulfonamide(Non-covalent)

EZL.3:

13 residues within 4Å:

Chain A: H.94, H.96, H.119, V.121, F.130, L.197, T.198, T.199, P.200, P.201, W.208
Ligands: ZN.1, GOL.5

7 PLIP interactions:

7 interactions with chain A

Hydrophobic interactions: A:F.130, A:F.130, A:L.197
Hydrogen bonds: A:T.198, A:T.198, A:T.199
Water bridges: A:Q.92

1 x MBO: MERCURIBENZOIC ACID(Non-covalent)

MBO.4:

6 residues within 4Å:

Chain A: V.134, Q.135, Q.136, P.137, E.204, C.205

4 PLIP interactions:

3 interactions with chain A, 1 Ligand-Water interactions

Hydrophobic interactions: A:P.137
Metal complexes: A:Q.136, A:C.205, H₂O.10

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5:

8 residues within 4Å:

Chain A: N.62, H.64, A.65, N.67, Q.92, H.94, T.199
Ligands: EZL.3

7 PLIP interactions:

7 interactions with chain A

Hydrogen bonds: A:N.62, A:N.67, A:N.67, A:Q.92
Water bridges: A:N.67, A:N.67, A:T.199

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Di Fiore, A. et al., Carbonic anhydrase inhibitors: the X-ray crystal structure of ethoxzolamide complexed to human isoform II reveals the importance of thr200 and gln92 for obtaining tight-binding inhibitors. Bioorg.Med.Chem.Lett. (2008)

Release Date

2008-04-08

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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