SMTL ID : 3dv1.1 (2 other biounits)

Crystal structure of human beta-secretase in complex with NVP-ARV999

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x AR9: (2R,4S)-N-butyl-4-[(2S,5S,7R)-2,7-dimethyl-3,15-dioxo-1,4-diazacyclopentadecan-5-yl]-4-hydroxy-2-methylbutanamide(Non-covalent)

AR9.1: 19 residues within 4Å: Chain A: Q.28, G.29, L.46, D.48, G.50, V.85, P.86, Y.87, T.88, Q.89, F.124, I.126, W.131, I.142, Y.214, D.244, G.246, T.247, T.248 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:V.85, A:Y.87, A:T.88, A:Q.89, A:F.124, A:I.126, A:W.131, A:Y.214 Hydrogen bonds: A:D.48, A:G.50, A:T.88, A:T.88, A:Q.89, A:G.246, A:T.248, A:T.248 Water bridges: A:Q.89, A:N.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Machauer, R. et al., Macrocyclic peptidomimetic beta-secretase (BACE-1) inhibitors with activity in vivo. Bioorg.Med.Chem.Lett. (2009)

Release Date

2009-02-24

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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