SMTL ID : 5qcs.3 (2 other biounits)

Crystal structure of BACE complex with BMC024

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

monomer

Ligands

1 x AXF: (2R,4S)-N-BUTYL-4-HYDROXY-2-METHYL- 4-((E)-(4AS,12R,15S,17AS)-15-METHYL -14,17-DIOXO-2,3,4,4A,6,9,11,12,13, 14,15,16,17,17A-TETRADECAHYDRO-1H-5 ,10-DITHIA-1,13,16-TRIAZA-BENZOCYCL OPENTADECEN-12-YL)-BUTYRAMIDE(Non-covalent)

AXF.1: 21 residues within 4Å: Chain A: S.26, G.27, Q.28, G.29, L.46, D.48, G.50, S.51, V.85, P.86, Y.87, T.88, Q.89, F.124, I.142, Y.214, I.242, D.244, G.246, T.247, T.248 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.85, A:Q.89, A:F.124, A:I.242 Hydrogen bonds: A:D.48, A:G.50, A:T.88, A:Q.89, A:G.246, A:T.247, A:T.248, A:T.248, A:T.248 Water bridges: A:N.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parks, C.D. et al., D3R grand challenge 4: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J.Comput.Aided Mol.Des. (2020)

Release Date

2020-06-03

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Beta-secretase 1

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