SMTL ID : 5qd9.3 (2 other biounits)

Crystal structure of BACE complex with BMC005

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x E6Y: (5S,8S,10R)-8-[(1R)-2-{[1-(3-tert-butylphenyl)cyclopropyl]amino}-1-hydroxyethyl]-4,5,10-trimethyl-1-oxa-4,7-diazacyclohexadecane-3,6-dione(Non-covalent)

E6Y.1: 23 residues within 4Å: Chain A: G.27, Q.28, G.29, L.46, D.48, G.50, S.51, V.85, P.86, Y.87, T.88, Q.89, F.124, W.131, I.134, I.142, R.144, Y.214, I.242, D.244, G.246, T.247, T.248 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:L.46, A:V.85, A:Y.87, A:Y.87, A:Y.87, A:T.88, A:F.124, A:W.131, A:I.134, A:I.142, A:Y.214, A:I.242 Hydrogen bonds: A:G.50, A:T.88, A:Q.89, A:D.244, A:G.246, A:T.248, A:T.248 Water bridges: A:N.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parks, C.D. et al., D3R grand challenge 4: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J.Comput.Aided Mol.Des. (2020)

Release Date

2020-06-03

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Beta-secretase 1

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