SMTL ID : 4lxk.1 (2 other biounits)

Crystal Structure of Human Beta Secretase in Complex with compound 11d

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x 1YT: (1R,3S,4S,5R)-3-(4-amino-3-fluoro-5-{[(2R)-1,1,1-trifluoro-3-methoxypropan-2-yl]oxy}benzyl)-5-[(3-tert-butylbenzyl)amino]tetrahydro-2H-thiopyran-4-ol 1-oxide(Non-covalent)

1YT.1: 25 residues within 4Å: Chain A: G.27, Q.28, G.29, L.46, D.48, G.50, S.51, V.85, P.86, Y.87, T.88, Q.89, G.90, K.123, F.124, I.126, W.131, I.134, I.142, R.144, Y.214, D.244, G.246, T.247, T.248 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.46, A:V.85, A:Y.87, A:Y.87, A:I.134, A:I.142, A:Y.214 Hydrogen bonds: A:D.48, A:T.88, A:T.88, A:Q.89, A:K.123, A:D.244 Water bridges: A:T.248 Salt bridges: A:D.244 pi-Stacking: A:Y.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rueeger, H. et al., Discovery of cyclic sulfoxide hydroxyethylamines as potent and selective beta-site APP-cleaving enzyme 1 (BACE1) inhibitors: structure based design and in vivo reduction of amyloid beta-peptides. Bioorg.Med.Chem.Lett. (2013)

Release Date

2013-08-28

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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