SMTL ID : 5qdc.3 (2 other biounits)

Crystal structure of BACE complex with BMC019 hydrolyzed

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: G.50, S.51, V.85, P.86, Y.87, I.142, R.144, Y.214 Ligands: E77.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.144

1 x E77: (4S)-4-[(1R)-1,2-dihydroxyethyl]-N,N-dimethyl-2-oxo-11,16-dioxa-3-azatricyclo[15.3.1.1~6,10~]docosa-1(21),6(22),7,9,17,19-hexaene-19-carboxamide(Non-covalent)

E77.2: 18 residues within 4Å: Chain A: G.27, Q.28, G.29, L.46, D.48, G.50, Y.87, T.88, Q.89, F.124, I.126, W.131, D.244, G.246, T.247, T.248, R.251 Ligands: GOL.1 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:L.46, A:Y.87, A:Y.87, A:T.88, A:Q.89, A:F.124, A:F.124, A:I.126, A:W.131 Hydrogen bonds: A:T.88, A:T.88, A:Q.89, A:Q.89, A:D.244, A:G.246, A:T.247, A:T.248, A:T.248 Water bridges: A:T.88, A:R.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parks, C.D. et al., D3R grand challenge 4: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J.Comput.Aided Mol.Des. (2020)

Release Date

2020-06-03

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Beta-secretase 1

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