SMTL ID : 5qd0.3 (2 other biounits)

Crystal structure of BACE complex withBMC006

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x E5Y: (5S,8S,10R)-8-[(1R)-1-hydroxy-2-{[(5-propyl-1H-pyrazol-3-yl)methyl]amino}ethyl]-4,5,10-trimethyl-1-oxa-4,7-diazacyclohexadecane-3,6-dione(Non-covalent)

E5Y.1: 20 residues within 4Å: Chain A: G.27, Q.28, G.29, L.46, D.48, G.50, S.51, P.86, Y.87, T.88, Q.89, F.124, W.131, I.134, I.142, Y.214, D.244, G.246, T.247, T.248 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.46, A:Y.87, A:Y.87, A:T.88, A:F.124, A:W.131, A:I.134, A:Y.214 Hydrogen bonds: A:G.50, A:G.50, A:T.88, A:T.88, A:Q.89, A:G.246, A:T.247, A:T.248, A:T.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parks, C.D. et al., D3R grand challenge 4: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J.Comput.Aided Mol.Des. (2020)

Release Date

2020-06-03

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Beta-secretase 1

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