SMTL ID : 5qcq.3 (2 other biounits)

Crystal structure of BACE complex with BMC025

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

monomer

Ligands

1 x AFJ: (2R,4S,5S)-N-butyl-4-hydroxy-2,7-dimethyl-5-{[N-(4-methylpentanoyl)-L-methionyl]amino}octanamide(Non-covalent)

AFJ.1: 20 residues within 4Å: Chain A: G.27, Q.28, G.29, L.46, D.48, G.50, S.51, V.85, P.86, Y.87, T.88, Q.89, F.124, I.142, Y.214, D.244, G.246, T.247, T.248, R.251 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.46, A:V.85, A:Y.87, A:T.88, A:F.124 Hydrogen bonds: A:D.48, A:G.50, A:T.88, A:Q.89, A:G.246, A:T.247, A:T.248, A:T.248 Water bridges: A:Q.89, A:N.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parks, C.D. et al., D3R grand challenge 4: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J.Comput.Aided Mol.Des. (2020)

Release Date

2020-06-03

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Beta-secretase 1

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