SMTL ID : 5qd4.1 (2 other biounits)

Crystal structure of BACE complex with BMC023

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

monomer

Ligands

1 x AXQ: {(E)-(3R,6S,9R)-3-[(1S,3R)-3-((S)-1 -BUTYLCARBAMOYL-2-METHYL-PROPYLCARB AMOYL)-1-HYDROXY-BUTYL]-6-METHYL-5, 8-DIOXO-1,11-DITHIA-4,7-DIAZA-CYCLO PENTADEC-13-EN-9-YL}-CARBAMIC ACID TERT-BUTYL ESTER(Non-covalent)

AXQ.1: 23 residues within 4Å: Chain A: G.27, Q.28, G.29, L.46, D.48, G.50, S.51, V.85, P.86, Y.87, T.88, Q.89, I.126, W.131, I.142, Y.214, I.242, D.244, G.246, T.247, T.248, N.249, R.323 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:L.46, A:V.85, A:T.88, A:Q.89, A:W.131, A:I.142, A:Y.214, A:I.242 Hydrogen bonds: A:D.48, A:G.50, A:P.86, A:T.88, A:T.88, A:Q.89, A:Q.89, A:G.246, A:T.248, A:T.248, A:T.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parks, C.D. et al., D3R grand challenge 4: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J.Comput.Aided Mol.Des. (2020)

Release Date

2020-06-03

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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