SMTL ID : 5qcr.1 (2 other biounits)

Crystal structure of BACE complex with BMC026

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x E4J: 2-(butylamino)-N-[(2S,3S,5R)-6-(butylamino)-3-hydroxy-5-methyl-6-oxo-1-phenylhexan-2-yl]-6-methoxypyridine-4-carboxamide(Non-covalent)

E4J.1: 25 residues within 4Å: Chain A: S.26, G.27, Q.28, G.29, L.46, D.48, G.50, S.51, P.86, Y.87, T.88, Q.89, F.124, I.126, W.131, I.134, I.142, R.144, Y.214, D.244, S.245, G.246, T.247, T.248, R.251 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.46, A:Y.87, A:Q.89, A:F.124, A:W.131, A:I.134, A:T.247 Hydrogen bonds: A:D.48, A:G.50, A:T.88, A:T.88, A:Q.89, A:G.246, A:T.248, A:T.248 Water bridges: A:T.248, A:T.248 pi-Stacking: A:Y.87

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: T.88, R.251, Q.342, S.343, S.344, T.345 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.342, A:S.344, A:T.345 Salt bridges: A:R.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parks, C.D. et al., D3R grand challenge 4: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J.Comput.Aided Mol.Des. (2020)

Release Date

2020-06-03

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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