SMTL ID : 5qcu.2 (2 other biounits)

Crystal structure of BACE complex with BMC022

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x E51: (2R,4S)-N-butyl-4-[(5S,8S,10R)-5,10-dimethyl-3,3,6-trioxo-3lambda~6~-thia-7-azabicyclo[11.3.1]heptadeca-1(17),13,15-trien-8-yl]-4-hydroxy-2-methylbutanamide(Non-covalent)

E51.1: 19 residues within 4Å: Chain A: G.27, Q.28, G.29, L.46, D.48, G.50, S.51, P.86, Y.87, T.88, Q.89, W.131, I.142, Y.214, I.242, D.244, G.246, T.247, T.248 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.46, A:L.46, A:Y.87, A:Y.87, A:T.88, A:W.131, A:I.242 Hydrogen bonds: A:D.48, A:G.50, A:T.88, A:Q.89, A:G.246

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parks, C.D. et al., D3R grand challenge 4: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J.Comput.Aided Mol.Des. (2020)

Release Date

2020-06-03

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-secretase 1

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