SMTL ID : 4lxa.2 (2 other biounits)

Crystal Structure of Human Beta Secretase in Complex with Compound 11a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: R.221, E.223, Y.302, V.391, T.392 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.223, A:V.391, A:T.392

1 x 1YS: (1R,3S,4S,5R)-3-{4-amino-3-fluoro-5-[(1,1,1,3,3,3-hexafluoropropan-2-yl)oxy]benzyl}-5-[(3-tert-butylbenzyl)amino]tetrahydro-2H-thiopyran-4-ol 1-oxide(Non-covalent)

1YS.2: 26 residues within 4Å: Chain A: G.27, Q.28, G.29, L.46, D.48, G.50, S.51, V.85, P.86, Y.87, T.88, Q.89, G.90, K.123, F.124, I.126, W.131, I.134, I.142, R.144, Y.214, I.242, D.244, G.246, T.247, T.248 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.46, A:V.85, A:Y.87, A:I.134, A:I.142, A:Y.214 Hydrogen bonds: A:D.48, A:T.88, A:Q.89, A:F.124, A:D.244 Salt bridges: A:D.244 pi-Stacking: A:Y.87 Halogen bonds: A:T.248, A:T.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rueeger, H. et al., Discovery of cyclic sulfoxide hydroxyethylamines as potent and selective beta-site APP-cleaving enzyme 1 (BACE1) inhibitors: structure based design and in vivo reduction of amyloid beta-peptides. Bioorg.Med.Chem.Lett. (2013)

Release Date

2013-08-28

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-secretase 1

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